Omics Pipe is an open-source, modular computational platform that automates best practice multi-omics data analysis pipelines. Omics Pipe API is designed for general user would process their pipeline more friendly and efficiently. User has to apply our /pipelinerecipes/ to analyze data by our system. The system will check all environments and data, when all the processed steps are done, the results would be sent to user expected PATH.
User could view what modules we already have. Request URL is /modules
These modules would be arranged for pipeline. User views the stander pipeline we already have. Request URL is /pipelines
User could create new pipeline with already modules we have. It is like a recipe that user gives some information such as ingredients, steps...
When user creates group of data with /ingredientgroups/, the group of data would help user manage data very easy. Request URL is /ingredientgroups
The /ingredients/ is designed for user puts raw data in our systems. Request URL is /ingredients
User also creates group of steps with /stepgroups/. Request URL is /stepgroups
When user creates the step in order, user would arrange the priority in these steps. Request URL is /steps
If user has to process custom scripts, user would create their models with /modelscripts/. Request URL is /modelscripts
The modelscripts has a parameter is "scriptpath" that user puts scripts with ID of userfile. The userfile is designed to put custom code. User puts code with /userfiles/. Request URL is /userfiles
Finally, we will add this script on our system and user could see that on api GET /modules/. Request URL is /modules
User views all the arguments from /templates/ api we have, when user creates new scripts. Request URL is /templates
The Wang Lab at the University of Pennsylvania focuses on the genetics and genomics of Alzheimer’s disease and other neurodegenerative disorders, and informatics and algorithm development for genome-scale experiments.
The Omics Pipe API help user to apply or arrange pipeline to system. When system gets the appointments from user, we will make sure the process could work and analyze data.
User takes easy to apply their demand, we know how to build and maintain omics pipe in time.