MANIFEST.in
README.md
requirements.txt
setup.cfg
setup.py
abstar/__init__.py
abstar/abstar.py
abstar/celeryconfig.py
abstar/preprocess.py
abstar.egg-info/PKG-INFO
abstar.egg-info/SOURCES.txt
abstar.egg-info/dependency_links.txt
abstar.egg-info/pbr.json
abstar.egg-info/requires.txt
abstar.egg-info/top_level.txt
abstar/assigners/.DS_Store
abstar/assigners/germline_dbs/.DS_Store
abstar/blast/blastn_darwin
abstar/blast/blastn_linux
abstar/blast/dbs/9114mouse_gl_J
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abstar/blast/dbs/human_gl_J
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abstar/blast/dbs/human_gl_V.nsi
abstar/blast/dbs/human_gl_V.nsq
abstar/blast/dbs/human_gl_V_old_withDalleles.txt
abstar/blast/dbs/macaque_gl_J
abstar/blast/dbs/macaque_gl_J.nhr
abstar/blast/dbs/macaque_gl_J.nin
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abstar/blast/dbs/rabbit_gl_J
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abstar/blast/dbs/vrc01mouse_gl_V.nsi
abstar/blast/dbs/vrc01mouse_gl_V.nsq
abstar/core/__init__.pyc
abstar/core/abstar.pyc
abstar/core/germline.pyc
abstar/core/vdj.pyc
abstar/ssw/__init__.py
abstar/ssw/ssw_wrap.py
abstar/ssw/dbs/9114mouse_D.fasta
abstar/ssw/dbs/9114mouse_J.fasta
abstar/ssw/dbs/9114mouse_V.fasta
abstar/ssw/dbs/b12mouse_D.fasta
abstar/ssw/dbs/b12mouse_J.fasta
abstar/ssw/dbs/b12mouse_V.fasta
abstar/ssw/dbs/human_D.fasta
abstar/ssw/dbs/human_J.fasta
abstar/ssw/dbs/human_V.fasta
abstar/ssw/dbs/macaque_D.fasta
abstar/ssw/dbs/macaque_J.fasta
abstar/ssw/dbs/macaque_V.fasta
abstar/ssw/dbs/mouse_D.fasta
abstar/ssw/dbs/mouse_J.fasta
abstar/ssw/dbs/mouse_V.fasta
abstar/ssw/dbs/rabbit_D.fasta
abstar/ssw/dbs/rabbit_J.fasta
abstar/ssw/dbs/rabbit_V.fasta
abstar/ssw/dbs/vrc01mouse_D.fasta
abstar/ssw/dbs/vrc01mouse_J.fasta
abstar/ssw/dbs/vrc01mouse_V.fasta
abstar/ssw/isotypes/9114mouse_isotypes.fasta
abstar/ssw/isotypes/b12mouse_isotypes.fasta
abstar/ssw/isotypes/human_isotypes.fasta
abstar/ssw/isotypes/macaque_isotypes.fasta
abstar/ssw/isotypes/mouse_isotypes.fasta
abstar/ssw/isotypes/vrc01mouse_isotypes.fasta
abstar/test_data/.DS_Store
abstar/test_data/test_1k.fasta
abstar/utils/.DS_Store
abstar/utils/__init__.py
abstar/utils/__init__.pyc
abstar/utils/ambigs.py
abstar/utils/basespace.py
abstar/utils/basespace.pyc
abstar/utils/basespace_credentials.py
abstar/utils/blast.py
abstar/utils/codons.py
abstar/utils/indels.py
abstar/utils/indels.pyc
abstar/utils/isotype.py
abstar/utils/isotype.pyc
abstar/utils/junction.py
abstar/utils/junction.pyc
abstar/utils/log.py
abstar/utils/mixins.pyc
abstar/utils/mongoimport.py
abstar/utils/mongoimport.pyc
abstar/utils/mutations.py
abstar/utils/mutations.pyc
abstar/utils/output.py
abstar/utils/output.pyc
abstar/utils/pandaseq.py
abstar/utils/pandaseq.pyc
abstar/utils/productivity.py
abstar/utils/productivity.pyc
abstar/utils/regions.py
abstar/utils/regions.pyc
abstar/utils/starcluster.py
abstar/utils/vdj.py
abstar/utils/germline_data/j_region_info_9114mouse
abstar/utils/germline_data/j_region_info_b12mouse
abstar/utils/germline_data/j_region_info_human
abstar/utils/germline_data/j_region_info_macaque
abstar/utils/germline_data/j_region_info_mouse
abstar/utils/germline_data/j_region_info_rabbit
abstar/utils/germline_data/j_region_info_vrc01mouse
abstar/utils/germline_data/v_region_info_9114mouse
abstar/utils/germline_data/v_region_info_b12mouse
abstar/utils/germline_data/v_region_info_human
abstar/utils/germline_data/v_region_info_macaque
abstar/utils/germline_data/v_region_info_mouse
abstar/utils/germline_data/v_region_info_rabbit
abstar/utils/germline_data/v_region_info_vrc01mouse
abstar/utils/queue/__init__.py
abstar/utils/queue/__init__.pyc
abstar/utils/queue/celery.py
abstar/utils/queue/celery.pyc
abstar/utils/queue/tasks.py
bin/.DS_Store
bin/abstar
bin/basespace_downloader
bin/batch_mongoimport
bin/make_basespace_credfile
docs/doc_requirements.txt